Bacteroidales

Bacteroidales
	Bacteroides biacutis anaerobically cultured in blood agar medium
Scientific classification
Domain:	Bacteria
Phylum:	Bacteroidota
Class:	Bacteroidia; Krieg 2012
Order:	Bacteroidales; Krieg 2012
Families
	Bacteroidaceae Pribram 1933 (Approved Lists 1980); Balneicellaceae Fadhlaoui et al. 2016; Barnesiellaceae García-López et al. 2020; Dysgonomonadaceae García-López et al. 2020; "Candidatus Homeothermaceae" Ormerod et al. 2016; Lentimicrobiaceae Sun et al. 2016; Marinifilaceae Iino et al. 2014; Marinilabiliaceae Ludwig et al. 2012; Muribaculaceae Lagkouvardos et al. 2019; Odoribacteraceae Munoz et al. 2016; "Paludibacteraceae" Ormerod et al. 2016; Porphyromonadaceae Krieg 2012; Prevotellaceae Krieg 2012; Prolixibacteraceae Huang et al. 2014; Rikenellaceae Krieg et al. 2012; Salinivirgaceae Ben Hania et al. 2017; "Tannerellaceae" Ormerod et al. 2016; Tenuifilaceae Podosokorskaya et al. 2021; Williamwhitmaniaceae Pikuta et al. 2017; Genera not assigned to a family "Candidatus Armantifilum" Desai et al. 2010; "Candidatus Azobacteroides" Hongoh et al. 2008; "Candidatus Paraporphyromonas" Naas et al. 2018; "Candidatus Symbiothrix" Hongoh et al. 2007; "Candidatus Tammella" Hongoh et al. 2007; "Candidatus Vestibaculum" Stingl et al. 2004; ;
Synonyms
	Bacteroidia: "Bacteroidetia" Cavalier-Smith 2020; ; Bacteroidales: Marinilabiliales Wu et al. 2016; ;

Bacteroidales is an order of bacteria.^[2]^[3] Notably it includes the genera Prevotella and Bacteroides , which are commonly found in the human gut microbiota.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature^[3] and the phylogeny is based on whole-genome sequences.^[8]^{[lower-alpha 1]}

Bacteroidia

Odoribacteraceae

	Williamwhitmaniaceae

	Rikenellaceae

Lentimicrobiaceae

Salinivirgaceae

Prolixibacteraceae

	Balneicellaceae

	Marinifilaceae

Marinilabiliaceae

Porphyromonadaceae

	"Paludibacteraceae"

	Dysgonomonadaceae

"Tannerellaceae"

	Muribaculaceae

	Barnesiellaceae

	Prevotellaceae

	Bacteroidaceae

outgroups

Flavobacteriia

Notes

↑ Tenuifilaceae is not included in this phylogenetic tree.

References

↑ Krieg NR (2010). "Class I. Bacteroidia class. nov.". In Krieg NR, Staley JT, Brown DR, Hedlund BP, Paster BJ, Ward NL, Ludwig W, Whitman WB (eds.). Bergey's Manual of Systematic Bacteriology. Vol. 4 (2nd ed.). New York, NY: Springer. p. 25.
1 2 Krieg NR (2010). "Order I. Bacteroidales ord. nov.". In Krieg NR, Staley JT, Brown DR, Hedlund BP, Paster BJ, Ward NL, Ludwig W, Whitman WB (eds.). Bergey's Manual of Systematic Bacteriology. Vol. 4 (2nd ed.). New York, NY: Springer. p. 25.
1 2 3 Euzéby JP, Parte AC. "Bacteroidetes". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 25, 2021.
↑ Sayers; et al. "Bacteroidetes". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2016-03-20.
↑ Parker, Charles Thomas; Garrity, George M (19 October 2017). Parker, Charles Thomas; Garrity, George M (eds.). "Williamwhitmaniaceae Pikuta et al. 2017 emend. García-López et al. 2019". NamesforLife. doi:10.1601/tx.30875.
↑ Ormerod, Kate L.; Wood, David L. A.; Lachner, Nancy; Gellatly, Shaan L.; Daly, Joshua N.; Parsons, Jeremy D.; Dal'Molin, Cristiana G. O.; Palfreyman, Robin W.; Nielsen, Lars K.; Cooper, Matthew A.; Morrison, Mark; Hansbro, Philip M.; Hugenholtz, Philip (7 July 2016). "Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals". Microbiome. 4 (1): 36. doi:10.1186/s40168-016-0181-2. PMC 4936053. PMID 27388460.
↑ Hongoh Y, Sharma VK, Prakash T, Noda S, Toh H, Taylor TD, Kudo T, Sakaki Y, Toyoda A, Hattori M, Ohkuma M (2008). "Genome of an endosymbiont coupling N₂ fixation to cellulolysis within protist cells in termite gut". Science. 322 (5904): 1108–9. Bibcode:2008Sci...322.1108H. doi:10.1126/science.1165578. PMID 19008447. S2CID 24961278.
↑ García-López M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Göker M (2019). "Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes". Front Microbiol. 10: 2083. doi:10.3389/fmicb.2019.02083. PMC 6767994. PMID 31608019.

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[9] Tenuifilaceae is not included in this phylogenetic tree.

[Krieg1-1] Krieg NR (2010). "Class I. Bacteroidia class. nov.". In Krieg NR, Staley JT, Brown DR, Hedlund BP, Paster BJ, Ward NL, Ludwig W, Whitman WB (eds.). Bergey's Manual of Systematic Bacteriology. Vol. 4 (2nd ed.). New York, NY: Springer. p. 25.

[Krieg2-2] 1 2 Krieg NR (2010). "Order I. Bacteroidales ord. nov.". In Krieg NR, Staley JT, Brown DR, Hedlund BP, Paster BJ, Ward NL, Ludwig W, Whitman WB (eds.). Bergey's Manual of Systematic Bacteriology. Vol. 4 (2nd ed.). New York, NY: Springer. p. 25.

[LPSN-3] 1 2 3 Euzéby JP, Parte AC. "Bacteroidetes". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 25, 2021.

[4] Sayers; et al. "Bacteroidetes". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2016-03-20.

[5] Parker, Charles Thomas; Garrity, George M (19 October 2017). Parker, Charles Thomas; Garrity, George M (eds.). "Williamwhitmaniaceae Pikuta et al. 2017 emend. García-López et al. 2019". NamesforLife. doi:10.1601/tx.30875.

[6] Ormerod, Kate L.; Wood, David L. A.; Lachner, Nancy; Gellatly, Shaan L.; Daly, Joshua N.; Parsons, Jeremy D.; Dal'Molin, Cristiana G. O.; Palfreyman, Robin W.; Nielsen, Lars K.; Cooper, Matthew A.; Morrison, Mark; Hansbro, Philip M.; Hugenholtz, Philip (7 July 2016). "Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals". Microbiome. 4 (1): 36. doi:10.1186/s40168-016-0181-2. PMC 4936053. PMID 27388460.

[7] Hongoh Y, Sharma VK, Prakash T, Noda S, Toh H, Taylor TD, Kudo T, Sakaki Y, Toyoda A, Hattori M, Ohkuma M (2008). "Genome of an endosymbiont coupling N₂ fixation to cellulolysis within protist cells in termite gut". Science. 322 (5904): 1108–9. Bibcode:2008Sci...322.1108H. doi:10.1126/science.1165578. PMID 19008447. S2CID 24961278.

[García-López-8] García-López M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Göker M (2019). "Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes". Front Microbiol. 10: 2083. doi:10.3389/fmicb.2019.02083. PMC 6767994. PMID 31608019.

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[lower-alpha 1]